Building via Native Builder overrides every change to git repo

Hi, For a native mobile project I'm working on we commit some custom stuff to the react native project on github: added npm packages made changes to the podfile some settings changes to the Xcode project changes to AppDelegate.m   The problem I'm facing is that everytime I build a new app via the UI builder in studio Pro it overrides all the above changes. This is really annoying because this means I have to clean those changes up manually. Is there a way to only push the changes we made in studio pro to github so the custom changes don't get overwritten everytime? Or this simply not possible with the UI builder? Maybe the UI builder is meant for only the initial commit and if you want to update the bundle you have to generate it via the CLI tool? I can't really find anything about this in the Mendix docs.
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