Are your students use a specilization of system.User? Another one than Account? I can Imagine that this is causing the issue. The pages in the Administration module are working with Account objects that are also a specilization of system.User
If you really need your own User entity, it could help to have it as specilization of Account or (what I would prefer) using a Userdata entity with a 1 to 1 association to Account.
Did you check the history of the object? Right click in the project explorer on the page or microflow and choose show history.
Follow up: I checked history of the page (Account_Overview) and the only two changes are the merge from the web modeler and the student committing his fix of the errors. No sign that students have specialized User or Account.
Wondering if the errors are being introduced by the web modeler. In each case I am fairly certain the students were working in the web modeler. In one case the errors were being reported in the web modeler which puzzled the students, since suddenly they had visibility into the Administration module in the web modeler and could not understand where the pages were coming from.
By way of background: I am having students start the projects in the web modeler and then transition to desktop modeler.